Senior Bioinformatics Engineer

Posted about 1 month agoViewed

💎 Seniority level: Senior

📍 Location: United States

💸 Salary: 117400.0 - 146800.0 USD per year

🔍 Industry: Software Development

🏢 Company: Natera👥 1001-5000💰 $250,000,000 Post-IPO Equity over 1 year ago🫂 Last layoff about 2 years agoWomen's Biotechnology Medical Genetics Health Diagnostics

🗣️ Languages: English

🪄 Skills: AWSDockerPythonSoftware DevelopmentBashGitMachine LearningNumpySoftware ArchitectureAlgorithmsData StructuresPandasCI/CDLinuxSoftware EngineeringData management

Requirements:

MS/PhD in Computer Science, Computer Engineering, Bioinformatics, or related field with a strong focus on cancer epi/genomics
Highly experienced in software engineering, algorithm development, and sequencing data analysis, proven through development of production-level software
Deep understanding and extensive hands-on experience with best practices in software development, including design principles, object-oriented design patterns, testing, deployment, version control, code review, and documentation.
Extensive experience in deployment using containerization technologies, such as Docker
Highly experienced in distributed computing on cloud, AWS is preferred
Experienced in code profiling to identify opportunities for code optimization in terms of runtime and memory usage
Deep understanding of sequencing data
Expert in coding Python and using its scientific library stack including Numpy and Pandas
Expert in using Linux command-line tools and writing shell scripts
Ability to work independently while managing multiple objectives and timelines

Responsibilities:

Design and develop production-level code – both writing new code and refactoring existing code – with a strong emphasis on software architecture, optimization, scalability, robustness, maintainability, and thorough documentation, adhering to best software development practices
Design and implement comprehensive tests across the entire codebase and pipeline, including unit tests, integration tests, and end-to-end tests
Facilitate training and evaluation of Machine Learning models on large datasets using distributed computing on AWS
Ability to collaborate between the R&D team and Engineering team to develop and to troubleshoot production software
Participate in Code and Design Reviews

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🔥 Senior Bioinformatics Engineer

Posted 4 months ago

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💸 160453.0 - 207000.0 USD per year

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🏢 Company: Foresite Labs👥 11-50 Biotechnology Biopharma Medical Health Care

🔧 Requirements

MS or PhD in bioinformatics, computer science, or equivalent.
3-8 years of relevant work experience in industry post-PhD or MS.
Experience establishing efficient, reproducible pipelines for the analysis of biological data and other data types preferred.
Familiarity with cloud platforms (e.g., AWS).
Familiarity with ETL process and data integration techniques.
Experience building no-code tools that make analytical results accessible to decision makers (e.g., automated reports or dashboards) preferred.
Ability to write high-quality code both independently and as part of a team.
Experience with at least one scripting language (e.g., Python) and at least one database language (e.g., SQL) required.
Experience with workflow systems (e.g., Nextflow, WDL/CWL, Airflow, etc) and/or statistical languages (e.g., R), valued but not essential.

💡 Responsibilities

Create efficient pipelines for the analysis of genetic, functional genomic, proteomic, and other molecular data types.
Integrate scientific pipelines and their output with other structured and unstructured data, including implementation of automated reports and dashboards.
Collaborate with scientists and software engineers to execute complex analyses, including integration of internally and externally developed tools.
Manage inputs, intermediates, and results of complex pipelines, providing clear provenance and reproducibility for critical decisions.

AWSPythonSoftware DevelopmentSQLETLData visualizationScripting

Posted 4 months ago

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