Software Engineer – Bioinformatics Pipelines

OnTracHealthcare Genomics

United States only, fully remoteContractMiddle

Salary$100 – $115 / hour

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Job Details

Professional software engineering experience with a demonstrated background in bioinformatics pipeline engineering
Hands-on production experience with Python, Bash, and Nextflow
Strong software engineering fundamentals focused on software quality, performance tuning, automation, and operational support
Experience developing, tuning, and operating pipelines in an on-premise high-performance computing (HPC) environment
Experience integrating software with laboratory systems and sequencing instruments
Experience working as a member of an agile team
Ability to integrate into an established team quickly and contribute with limited ramp-up

Maintain and improve the software quality of the genomics pipelines running in the customer's on-premise HPC environment
Tune the performance of the pipelines in the HPC environment
Automate pipeline operations and recurring engineering tasks
Provide operational support for the pipelines, including troubleshooting failures and resolving issues
Implement and maintain integrations between the pipelines and laboratory systems and sequencing instruments
Implement and maintain technical infrastructure for genomic data movement, analysis, and delivery
Support pipeline workload resulting from the LIS transition from Soft to Epic Beaker
Participate as a full member of an agile pipeline team

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