Contribute to active development on the sequencing analysis pipeline in Python, including bug fixes, feature work, and code reviews.
Own and maintain build configuration, CI/CD pipelines, and regression infrastructure (Jenkins, Bitbucket, HPC).
Respond to inbound triage requests from the field and internal teams, diagnosing and resolving pipeline failures on sequencing instruments.
Develop and maintain operational tooling including re-run utilities, job monitoring, and pipeline configuration management.
Work on data handling features including backup/upload logic, panel management, and sample sheet validation.
Implement locking, concurrency controls, and other reliability improvements to the pipeline execution framework.
Support package management and dependency maintenance across Python and JavaScript/TypeScript projects.
Develop and maintain lightweight web services, internal APIs, and database-backed tooling to support engineering and field operations.
Identify and close gaps in observability, documentation, and operational processes.
PythonJavascriptJenkins+4 more
About Singular Genomics
Singular Genomics is transforming life science with novel sequencing technologies. You will help build instruments that empower researchers and clinicians to advance science and medicine. Our G4 Sequencing Platform delivers speed, accuracy, flexibility, and scale for genomic applications. We are now developing the G4X Spatial Sequencer for multiomic analysis at subcellular resolution. From our 2016 founding, we've raised over $345 million in funding, including a $258 million IPO, and generated $2.91 million in revenue in 2023. Our team of 162 employees crafts powerful solutions for research institutions and healthcare providers.
How We Work
You will join a team that fosters creativity and technical excellence. We emphasize collaboration and celebrate diversity, striving to create an inclusive environment. While our headquarters are in La Jolla, California, and our manufacturing in Sorrento Valley, some roles offer remote flexibility. If remote, you'll travel to San Diego quarterly, balancing deep focus with in-person connection. Our teams also engage in activities like run, surf, mountain biking clubs, and onsite yoga, building camaraderie.
Engineering at Singular Genomics
You will solve complex challenges in genomic analysis, working on our core sequencing analysis platform. Our engineers contribute across pipeline engineering, operational tooling, and field support. We use solid Python fundamentals within a large, production codebase. You will maintain build configuration, CI/CD pipelines, and regression infrastructure using tools like Jenkins and Bitbucket. We also work with relational databases, web services, and pipeline orchestration like Airflow. Developing and maintaining operational tooling, addressing data handling, and improving pipeline reliability are key aspects of our work. You'll ensure our platforms remain robust, scalable, and responsive to scientific advancements. We value strong debugging instincts and the ability to triage ambiguous failures under pressure.
Why Join Us
Pioneer in next-generation sequencing and multiomics technologies, developing products that advance science.
Contribute to a core sequencing analysis platform impacting researchers and clinicians.
Work across diverse technical areas, from pipeline engineering to operational tooling and field support.
Join a growing company with 162 employees, backed by significant funding and an IPO.
Collaborate in a culture emphasizing creativity, technical excellence, and diversity, with options for remote work.
Benefits & Perks
Competitive salary range of $108,400 - $127,500 for Software Engineer roles.
Eligibility for equity as part of the compensation package.
Top-tier healthcare, vision, and dental insurance.
401k matching.
Unlimited PTO for salary employees and three weeks per year for hourly employees.